DiffusionKit

A batch processing GUI-interface for DiffusionKit

_images/diffusionkit.png
  • D.K. dir: path of installed DiffusionKit, e.g. C:/Program Files (x86)/DiffusionKit
  • id index: identifier to find unique string for each subject
  • filetype: files in the filetype will be searched in input directories.
  • 4D nifti files: if the input data is 4D, check this item. Otherwise uncheck.
  • input dirs: directories can be input either using a *.txt file or spm select window.
  • Choose below options to perform in each directory.
    • eddy correction
    • reconstruction–DTI
    • tracking–DTI
    • reconstruction–HARDI(ODF)
    • reconstruction–HARDI(FOD)

Results will be saved in each input directory.

  • Buttons:
    • S: Save parameters of the current panel to a *.mat file. The *.mat can be further loaded for the panel or be used in a script processing.
    • L: Load parameters from *.mat for the current panel.
    • ?: Help information.

For more information, please visit http://diffusion.brainnetome.org/

  • Reference:
  1. Sangma Xie, Liangfu Chen, Nianming Zuo and Tianzi Jiang. DiffusionKit: A Light One-Stop Solution for Diffusion MRI Data Analysis. Journal of Neuroscience Methods. vol. 273, pp. 107-119, 2016.