Slice Mapping

This function is used to visualize 3D volume by cut it into no more than 19 slices. All slices will be displayed in a single window, overlapped with the background volume. We can choose the range of displaying if necessary.

_images/slice_mapping.png
  • view angle: direction of slice viewing
  • slice order: choose which slice(s) to display
  • bg: directory of backgroud volume file
  • brain vol: directory of displayed volume file
  • white background: the background of the display window will be white if checked, otherwise it will be black.
  • only positive: only voxels with positive value will be displayed if checked
  • only negative: only voxels with negetive value will be displayed if checked
  • expand display range: if checked, the voxels with value out of range will be displayed as the threshold value
  • colormap: choose the color map of slice viewing
  • thr vol: set the range to generate a mask for input volume, seperated by ‘,’.
  • col title: title of the colorbar
  • Buttons:
    • S: Save parameters of the current panel to a *.mat file. The *.mat can be further loaded for the panel or be used in a script processing.
    • L: Load parameters from *.mat for the current panel.
    • ?: Help information.