STEP 7: Network Properties

  • Input Directories of Network Calculation:
    Click the NET button, then Network Calculation. Open the data directories selection GUI and find the folder where ROI Calculation in STEP 4 outputs.
  • Network Calculation:
    Click the … button of Network Properties, select those you need in the Brant Net Measure Options GUI. Those options with (*) will slow down the speed of calculation.
  • Input Directories of Network Statistics:
    Click Network Statistics button in NET GUI. Open the directories selection GUI and find the folder where Network Calculation above outputs.
  • Network Statistics
    Remove strings from search results parsed by id index such as _corr_z_network by typing the strings into the string removal. Select the *.csv file created in STEP 6 as input of table. If your table file contains other information such as age or sex, you can input those titles in the regressors to ignore them.
_images/step7_Network_Calculation.png

fig.1 NET => Network Calculation

_images/step7_Network_Statistics.png

fig.2 STAT => Network Statistics

_images/clustering_coefficient_corr_ttest2_grp1_vs_grp2.png

fig.3 Network Statistics Result 1

_images/clustering_coefficient_spar_ttest2_grp1_vs_grp2.png

fig.4 Network Statistics Result 2