DICOM Convert |
brant_4D.nii |
slice timing |
abrant_4D.nii |
abrant_4D.mat |
realign |
rabrant_4D.nii |
meanabrant_4D.nii |
rp_abrant_4D.txt |
coregister |
wholebrain.nii |
betStruchImg.nii |
normalise |
wrabrant_4D.nii |
denoise |
dGSRwrabrant_4D.nii |
dnoGSRwrabrant_4D.nii |
fdGSRwrabrant_4D.nii |
fdnoGSRwrabrant_4D.nii |
smooth |
s6fdGSRwrabrant_4D.nii |
s6fdnoGSRwrabrant_4D.nii |
Visual Check |
axial (folder) |
coronal (folder) |
ortho (folder) |
sagital (folder) |
Head Motion Est |
brant_headmotion_exclusions.txt |
brant_headmotion_result.csv |
Draw ROI |
brant_2_sphere_rois.nii/brant_2_cube_rois.nii |
roi_info_sphere_2_rois.csv/roi_info_cube_2_rois.csv |
ROI Calculation |
mean_ts(folder) |
roi2roi_r_pearson_correlation (folder) |
roi2roi_z_pearson_correlation (folder) |
roi2wb_r_pearson_correlation (folder) |
roi2wb_z_pearson_correlation (folder) |
brant_roi_info.csv |
roi_history.txt |
T-Tests |
grp1_grp2_group_info.csv |
group_info.mat |
ttest2_diary.txt |
ttest2_grp1_vs_grp2.mat |
ttest2_grp1_vs_grp2_h_unc.txt |
ttest2_grp1_vs_grp2_pval_left_unc.txt |
ttest2_grp1_vs_grp2_pval_right_unc.txt |
ttest2_grp1_vs_grp2_tval.txt |
Network
Calculation |
*_corr_z_network.mat |
Network
Statistics |
clustering_coeffecient_corr_ttest2_grp1_vs_grp2.png |
clustering_coeffecient_spar_ttest2_grp1_vs_grp2.png |
network_clustering_coeffecient.csv |
network_clustering_coeffecient_ttest2_grp1_vs_grp2_stat.csv |
readme.txt |