Slice Timing

• slice order: the order of scans in one volume, seperated by comma or space.
• TR(s): repetition time, cannot be 0.
• reference slice: normally be the number of scan in the middle of the order.(when dealing with task-fMRI, note that selecting the middle timepoint as reference will change the timing of task TR)
• prefix: output prefix.

e.g:

slice order: 1:2:33,2:2:32
TR: 2
reference slice: 33

• Preprocess Modules

  • Slice Timing

  • Realign

  • Coregister (optional)

  • Normalize

    • SPM8
    • SPM12

  • Denoise

  • Smooth